doRiNA database

2012-02-29

New aggregated tracks have been released on the doRiNA site

These consist of the union or intersection between CLIP regions present in several experiments. For the union, all regions were combined. For the intersection, only those genomic regions that are spanned by CLIP regions from all included experiments were retained. These new tracks allow even more sophisticated refinement of sites of interest (e.g. all miRNA sites included in any of the incorporated AGO-CLIPs) especially when using the combinatorial search option.

The newly included aggregate tracks are:

Union of all CLIP experiments integrated into doRiNA
Union and intersection tracks of Ago (human, mouse), Elavl1 (human) and Gld1 (c. elegans)

2011-11-15

doRiNA manuscript went online

Acknowledgements

This project is a collaboration of many scientists at the BIMSB:

Gerd Anders developed the database with help from Marvin Jens, Minnie Fang, Sebastian Mackowiak, Andranik Ivanov, Jonas Maaskola, and Robin Graf who developed the computational pipeline for analyzing PAR-CLIP experiments. This analysis pipeline will be published elsewehere. Sebastian Mackowiak updated PicTar.

The project is jointly supervised by Christoph Dieterich (database), Markus Landthaler (PAR-CLIP), and Nikolaus Rajewsky (PAR-CLIP analysis pipeline, PicTar).

General Info

doRiNA is being developed at the Berlin Institute for Medical Systems Biology (BIMSB) by the group "Bioinformatics in Quantitative Biology" (group leader: Christoph Dieterich).

We kindly ask users to cite the following reference if they include doRiNA results in their manuscripts:

Anders G, Mackowiak SD, Jens M, Maaskola J, Kuntzagk A, Rajewsky N, Landthaler M, Dieterich C.
doRiNA: a database of RNA interactions in post-transcriptional regulation.
Nucleic Acids Res. 2012 Jan;40(Database issue):D180-6. Epub 2011 Nov 15.

What's New? New aggregated tracks have been released on the doRiNA site. (Latest News...)